Victor is a full stack software engineer who loves travelling and building things. Most recently created Ewolo, a cross-platform workout logger.

    How to clean up Ubuntu software package repositories

    I recently had the pleasure of upgrading my ubuntu system from 18.04 to 18.10. I went via the commandline: sudo do-release-upgrade and unfortunately I had an internet connection issue halfway through downloading packages. What made the situation worse was that I went and cancelled the upgrade via a Ctrl + c misclick! Long story short, my system was stuck pretending to be 18.10 and I went down a rabbit hole of cleaning up my package repository sources. Fortunately, I managed to get everything back to square 1 and finish the upgrade. The following are my notes from this escapade regarding debian-based systems and software repositories.

    Software sources lists
    • The main Ubuntu software package repository locations are found here: /etc/apt/sources.list.
    • Additional repositories are found under /etc/apt/sources.list.d/, e.g. /etc/apt/sources.list.d/vscode.list.
    • Whenever the Ubuntu upgrade process starts, it makes a backup of all the repository configuration by making a .distUpgrade file for all the repository list files.
    • Moreover, the Ubuntu upgrade process disables all external software repositories to enable a smooth upgrade process. This is done by either commenting out the external source entries in sources.list or by emptying the contents of the external source repo .list file.
    Restoring from a partial upgrade

    Thus, one of the first steps that I needed to do to restore my system was to move the .distUpgrade to their original configuration:

    sudo mv /etc/apt/sources.list.distUpgrade /etc/apt/sources.list

    Next I went and removed older external repositories that I didn't need. Removing a repository can be done by either commenting out the repository by preceding the line with a # character, or simply deleting the relevant .list file, e.g. sudo rm /etc/apt/sources.list.d/heroku.list*. Once the repostories are cleaned up, the sudo apt update command can be run to refresh the package cache.

    Errors while fetching repositories

    As it turns out, I had quite a few issues with some of the older repositories:

    Invalid architecture
    N: Skipping acquire of configured file 'main/binary-i386/Packages' as repository ' stable InRelease' doesn't support architecture 'i386'

    This can be fixed by specifying the architecture in the source definition: deb [arch=amd64] stable main.

    Invalid signing key
    W: GPG error: trusty/mongodb-org/3.2 Release: The following signatures were invalid: BADSIG D68FA50FEA312927 MongoDB 3.2 Release Signing Key

    This means that the signing key was invalid or expired. This can be fixed by updating the signing keys: sudo apt-key adv --keyserver hkp:// --recv EA312927.

    Clean up repository signing keys

    Finally, I also wanted to clean up repository signatures. This is unfortunately not quite simple at the time of writing. The commands are as follows:

    List all keys
    sudo apt-key list. Note that the key id is the last 8 characters of the key signature. For e.g. on my system the key id for Google is 7FAC5991.
    $ sudo apt-key list 
    pub   dsa1024 2007-03-08 [SC]
          4CCA 1EAF 950C EE4A B839  76DC A040 830F 7FAC 5991
    uid           [ unknown] Google, Inc. Linux Package Signing Key 
    sub   elg2048 2007-03-08 [E]
    List all expired keys
    sudo apt-key list | grep "expired "
    Delete a key
    sudo apt-key del [key-id]
    Add/update a key
    As observed above, adding and updating a key can be done via the following: sudo apt-key adv --keyserver --recv-keys [key-id]. You need to know the key id which will probably be noted along with the software installation procedure of your software package.
    A successful upgrade

    After restoring and cleaning up my software sources list, I was able to restart the upgrade process and it went fairly smoothly. I had some other issues:

    • Gnome extensions needed to be updated (3.30.x).
    • Numix dark theme was not working anymore, it required a small fix as noted here but I switched to yaru dark for better compatibility and support.

    I can highly recommend the new Ubuntu but in any case, good luck with cleaning up your software sources!

    HackerNews submission / discussion

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